Phenotype MicroArrays™ for Microbial Cells 사용 문헌 리스트 (161-240) 

240.   Tools to kill: Genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina, Islam MS; 

       Haque MS; Islam MM; Emdad EM; Halim A; Hossen QM; Hossain MZ; Ahmed B; Rahim S; Rahman MS; Alam MM; Hou S; 

       Wan X; Saito JA; Alam M; 2012 Apr, p.493-, BMC Genomics

239.   Expression of Shigella flexneri gluQ-rs gene is linked to dksA and controlled by a transcriptional terminator, 

       Caballero VC; Toledo VP; Maturana C; Fisher CR; Payne SM; Salazar JC; 2012 Apr, p.226, BMC Microbiol

238.   The evolution of metabolic networks of E. coli, Baumler DJ; Peplinski RG; Reed JL; Glasner JD; Perna NT; 2012 Apr, 

       p.182, BMC Syst Bio

237.   A central metabolic circuit controlled by QseC in pathogenic Escherichia coli, Hadjifrangiskou M; Kostakioti M; 

       Chen SL; Henderson JP; Greene SE; Hultgren SJ; 2011 Sep, p.1516-1529, Mol Microbiol

236.   Early adaptive developments of Pseudomonas aeruginosa after the transition from life in the environment to 

       persistent colonization in the airways of human cystic fibrosis hosts, Rau MH; Hansen SK; Johansen HK; Thomsen LE; 

       Workman CT; Nielsen KF; Jelsbak L; Hoiby N; Yang L; Molin S; 2011 Sep, p.1643-1658, Environmental Microbiology

235.   Evolving promiscuously, Andersson DI; 2011 Sep, p.1199-1200, Proc Natl Acad Sci USA

234.   Fungal physiology – a future perspective, Wilson RA; Talbot NJ; 2011 Oct, p.3810-3815, Microbiology

233.   Carbon source utilization patterns of Bacillus simplex ecotypes do not reflect their adaptation to ecologically 

       divergent slopes in ‘Evolution Canyon’, Israel, Sikorski J; Pukall R; Stackebrandt E; 2011 Nov 18, p.38-44, 

       FEMS Microbiology Ecology

232.   Complex phenotypic assays in high-throughput screening, Clemons PA; 2011 Nov, p.334-338, Current Opinion in 

       Chemical Biology, Curr Opin Chem Biol

231.   Application of phenotypic microarrays to environmental microbiology, Borglin S; Joyner D; DeAngelis KM; 

       Khudyakov J; D’haeseleer P; Joachimiak MP; Hazen T; 2011 Nov, p.41-48, Current Opinion in Biotechnology

230.   A Functional Genomics Approach to Establish the Complement of Carbohydrate Transporters in Streptococcus 

       pneumoniae, Bidossi A; Mulas L; Decorosi F; Colomba L; Ricci S; Pozzi G; Deutscher J; Viti C; Oggioni MR; 2011 May 3, 

       p.e33320, PLoS One

229.   The quorum sensing diversity within and between ecotypes of Bacillus subtilis, Stefanic P; Decorosi F; Viti C; Petito J; 

       Cohan FM; Mandic-Mulec I; 2011 May, Environmental Microbiology

228.   Assessing the Contributions of the LiaS Histidine Kinase to the Innate Resistance of Listeria monocytogenes to Nisin, 

       Cephalosporins, and Disinfectants, Collins B; Guinane CM; Cotter PD; Hill C; Ross RP; 2011 Mar, p.2923-2929, 

       Appl Environ Microbiol

227.   Classifying compound mechanism of action for linking whole cell phenotypes to molecular targets, Bourne CR; 

       Wakeham N; Bunce RA; Nammalwar B; Darrell BK; Barrow WW; 2011 Mar, p.216-223, J Mol Recognit

226.   Pseudomonas putida NBRIC19 dihydrolipoamide succinyltransferase (SucB) gene controls degradation of toxic 

       allelochemicals produced by Parthenium hysterophorus, Mishra S; Mishra A; Chauhan PS; Mishra SK; Kumari M; 

       Niranjan A; Nautiyal CS; 2011 Mar, p.793-808, J Appl Microbiol

225.   Genotype-phenotype associations in a nonmodel prokaryote, Enstrom M; Held K; Ramage B; Brittnacher M; 

       Gallagher L; Manoil C; 2011 Mar, MBio

224.   Hydrocarbon-degrading bacteria and the bacterial community response in gulf of Mexico beach sands impacted 

       by the deepwater horizon oil spill, Kostka JE; Prakash O; Overholt WA; Green SJ; Freyer G; Canion A; Delgardio J; 

       Norton N;Hazen TC; Huettel M; 2011 Jun, p.7962-7974, Appl Environ Microbiol

223.   Absence of Membrane Phosphatidylcholine Does Not Affect Virulence and Stress Tolerance Phenotypes in the 

       Opportunistic Pathogen Pseudomonas aeruginosa, Malek AA; Wargo MJ; Hogan DA; 2011 Jul, p.e30829, PLoS One

222.   Loss of elongation factor P disrupts bacterial outer membrane integrity, Zou SB; Hersch SJ; Roy H; Wiggers JB; 

       Leung AS; Buranyi S; Xie JL; Dare K; Ibba M; Navarre WW; 2011 Jul, p.413-425, Journal of Bacteriology

221.   Resistance phenotypes mediated by aminoacyl-phosphatidylglycerol synthases, Arendt W; Hebecker S; Jager S; 

       Nimtz M; Moser J; 2011 Jan 25, p.1401-1416, Journal of Bacteriology

220.   Genomic anatomy of Escherichia coli O157:H7 outbreaks, Eppinger M; Mammel MK; Leclerc JE; Ravel J; Cebula TA; 

       2011 Jan 25, p.20142-20147, Proc Natl Acad Sci USA

219.   Phenotypic changes in ciprofloxacin-resistant Staphylococcus aureus, Mesak LR; Davies J; 2011 Jan, p.785-791, 

       Research in Microbiology

218.   Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a 

       biological role for transcription of intergenic regions, Karpinets TV; Romine MF; Schmoyer DD; Kora GH; Syed MH; 

       Leuze MR; Serres MH; Park BH; Samatova NF; Uberbacher EC; 2011 Dec 16, p.baq012, Database (Oxford)

217.   Statistical methods for QTL mapping in cereals, Hackett CA; 2011 Dec 13, p.585-599, Plant Molecular Biology

216.   The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens, MacLean RC; Bell G; Rainey PB; 

       2011 Dec, p.8072-8077,Proc Natl Acad Sci USA

215.   Evolutionary dynamics of bacteria in a human host environment, Yang L; Jelsbak L; Marvig RL; Damkiaer S; 

       Workman CT; Rau MH; Hansen SK; Folkesson A; Johansen HK; Ciofu O; Hoiby N; Sommer MO; Molin S; 2011 Dec, 

       p.7481-7486, Proc Natl Acad Sci USA

214.   Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis, Oberhardt MA; 

       Puchalka J; Martins dos Santos VA; Papin JA; 2011 Aug, p.e1001116, PLoS Comput Biol

213.   Characterization of three lactic acid bacteria and their isogenic ldh deletion mutants shows optimization for 

       YATP (cell mass produced per mole of ATP) at their physiological pHs, Fiedler T; Bekker M; Jonsson M; Mehmeti I;

       Pritzschke A; Siemens N; Nes I; Hugenholtz J; Kreikemeyer B; 2011 Aug, p.612-617, Appl Environ Microbiol

212.   Role of VltAB, an ABC transporter complex, in viologen tolerance in Streptococcus mutans, Biswas S; Biswas I; 

       2011 Apr, p.1460-1469, Antimicrobial Agents and Chemotherapy

211.   Large-scale comparative phenotypic and genomic analyses reveal ecological preferences of shewanella species 

       and identify metabolic pathways conserved at the genus level, Rodrigues JL; Serres MH; Tiedje JM; 2011 Apr, 

       p.5352-5360, Appl Environ Microbiol

210.   Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development, Holder JW; 

       Ulrich JC; DeBono AC; Godfrey PA; Desjardins CA; Zucker J; Zeng Q; Leach AL; Ghiviriga I; Dancel C; Abeel T; Gevers D; 

       Kodira CD; Desany B; Affourtit JP; Birren BW; Sinskey AJ; 2010 Sep, p.e1002219, PLoS Genet

209.   Membrane proteases and aminoglycoside antibiotic resistance, Hinz A; Lee S; Jacoby K; Manoil C; 2010 Oct, 

       p.4790-4797, Journal of Bacteriology

208.   Artificial gene amplification reveals an abundance of promiscuous resistance determinants in Escherichia coli, 

       Soo VW; Hanson-Manful P; Patrick WM; 2010 Nov, p.1484-1489, Proc Natl Acad Sci USA

207.   An experimentally validated genome-scale metabolic reconstruction of Klebsiella pneumoniae MGH 78578, 

       iYL12282, Liao YC; Huang TW; Chen FC; Charusanti P; Hong JS; Chang HY; Tsai SF; Palsson BO; Hsiung CA; 2010 May, 

       p.1710-1717, Journal of Bacteriology

206.   Differential gene expression by RamA in ciprofloxacin-resistant Salmonella Typhimurium, Zheng J; Tian F; Cui S; 

       Song J; Zhao S; Brown EW; Meng J; 2010 May, p.e22161, PLoS One

205.   Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis, Desjardins CA; 

       Champion MD; Holder JW; Muszewska A; Goldberg J; Bailao AM; Brigido MM; Ferreira ME; Garcia AM; Grynberg M; 

       Gujja S; Heiman DI; Henn MR; Kodira CD; Leon-Narvaez H; Longo LV; Ma LJ; Malavazi I; Matsuo AL; Morais FV; 

       Pereira M; Rodriguez-Brito S; Sakthikumar S; Salem-Izacc SM; Sykes SM; Teixeira MM; Vallejo MC; Walter ME; 

       Yandava C; Young S; Zeng Q; Zucker J; Felipe MS; Goldman GH; Haas BJ; McEwen JG; Nino-Vega G; Puccia R; 

       San-Blas G; Soares CM; Birren BW; Cuomo CA; 2010 Mar, p.e1002345, PLoS Genet

204.   Cryptic prophages help bacteria cope with adverse environments, Wang X; Kim Y; Ma Q; Hong SH; Pokusaeva K; 

       Sturino JM; Wood TK; 2010 Mar, p.147, Nat Commun

203.   Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir, Eppinger M; Mammel MK;

       Leclerc JE; Ravel J; Cebula TA; 2010 Jun, p.2916-2925, Appl Environ Microbiol

202.   Variability of Escherichia coli O157 strain survival in manure-amended soil in relation to strain origin, 

       virulence profile, and carbon nutrition profile, Franz E; van Hoek AH; Bouw E; Aarts HJ; 2010 Jun, p.8088-8096, 

       Appl Environ Microbiol

201.   Characterization of the induction and cellular role of the BaeSR two-component envelope stress response of 

       Escherichia coli, Leblanc SK; Oates CW; Raivio TL; 2010 Jun, p.3367-3375, Journal of Bacteriology

200.   A novel fungal family of oligopeptide transporters identified by functional metatranscriptomics of soil eukaryotes,

       Damon C; Vallon L; Zimmermann S; Haider MZ; Galeote V; Dequin S; Luis P; Fraissinet-Tachet L; Marmeisse R; 2010 Jun, 

       p.1871-1880, ISME J

199.   Phenotypic and genotypic evidence for L-fucose utilization by Campylobacter jejuni, Muraoka WT; Zhang Q; 

       2010 Jul 30, p.1065-1075, Journal of Bacteriology

198.   Metabolic versatility and antibacterial metabolite biosynthesis are distinguishing genomic features of the fire 

       blight antagonist Pantoea vagans C9-1, Smits TH; Rezzonico F; Kamber T; Blom J; Goesmann A; Ishimaru CA; Frey JE; 

       Stockwell VO; Duffy B; 2010 Feb, p.e22247, PLoS One

197.   H2S: a universal defense against antibiotics in bacteria, Shatalin K; Shatalina E; Mironov A; Nudler E; 2010 Feb, 

       p.986-990, Science

196.   Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative 

       Escherichia coli strain 042, Chaudhuri RR; Sebaihia M; Hobman JL; Webber MA; Leyton DL; Goldberg MD; 

       Cunningham AF; Scott-Tucker A; Ferguson PR; Thomas CM; Frankel G; Tang CM; Dudley EG; Roberts IS; Rasko DA; 

       Pallen MJ; Parkhill J; Nataro JP; Thomson NR; Henderson IR; 2010 Dec, p.e8801, PLoS One

195.   Cronobacter (Enterobacter sakazakii): an opportunistic foodborne pathogen, Healy B; Cooney S; O’Brien S; 

       Iversen C; Whyte P; Nally J; Callanan JJ; Fanning S; 2010 Aug 1, p.339-350, Foodborne Pathog Dis

194.   Genes involved in yellow pigmentation of Cronobacter sakazakii ES5 and influence of pigmentation on 

       persistence and growth under environmental stress, Johler S; Stephan R; Hartmann I; Kuehner KA; Lehner A; 

       2010 Apr, p.1053-1061, Appl Environ Microbiol

193.   Functional analysis of pneumococcal drug efflux pumps associates the MATE DinF transporter to quinolone 

       susceptibility, Nadia Tocci, Francesco Iannelli, Alessandro Bidossi, Maria Laura Ciusa, Francesca Decorosi, Carlo Viti, 

       Gianni Pozzi, Susanna Ricci and Marco Rinaldo Oggioni, Published ahead of print 31 October 2012, 

       doi: 10.1128/AAC.01298-12.

192.   Global Phenotypic Characterization of Bacteria, B.R. Bochner, FEMS Microbiol. Rev., 2009, v. 33, pp.191-205.

191.   Host Cell-free Growth of the Q Fever Bacterium Coxiella burnetii, A. Omsland, D.C. Cockrell, D. Howe, E.R. Fischer, 

       K. Virtaneva, D.E. Sturdevant, S.F. Porcella, R.A. Heinzen, Proceedings of the National Academy of Sciences, 

       2009, Epub Feb. 25.

190.   Legionella pneumophila Couples Fatty Acid Flux to Microbial Differention And Virulence, R.L. Edwards, 

       Z.D. Dalebroux, M.S. Swanson, Mol. Microbiol., 2009, v. 71, pp. 1190-1204.

189.   SpoT Governs Legionella pneumophila Differentiation in Host Macrophages, Z.D. Dalebroux, R.L. Edwards, 

       M.S. Swanson, Mol. Microbiol., 2009, v.71, pp. 640-658.

188.   Involvement of the oscA Gene in the Sulphur Starvation Response and in Cr(VI) Resistance in Pseudomonas 

       corrugata 28, C. Viti, F. Decorosi, A. Mini, E. Tatti, L. Giovannetti, Microbiology, 2009, v. 155, pp. 95-105.

187.   Overcoming the Anaerobic Hurdle in Phenotypic Microarrays: Generation and Visualization of Growth Curve 

       Data for Desulfovibrio vulgaris Hildenborough, S. Borglin, D. Joyner, J. Jacobsen, A. Mukhopadhyay, T. C. Hazen, 

       J. Microbiol. Methods, 2008. v. 76 pp. 159-168.

186.   Characterization of the myo-Inositol Utilization Island of Salmonella enterica serovar Typhimurium, C. Kroger, 

       T.M. Fuchs, J. Bacteriol. 2009, v. 191, pp. 545-554.

185.   Phenotypic Diversity among Cronobacter spp., B. Tall, 1st International Meeting on Cronobacter, 2009, 

       Dublin, Ireland.

184.   What is (and isn’t) Cronobacter, C. Iversen, 1st International Meeting on Cronobacter, 2009, Dublin, Ireland.

183.   Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates 

       Applications in Biotechnology, J. Puchalka, M. A. Oberhardt, M. Godinho, A. Bielecka, D. Regenhardt, K. N. Timmis, 

       J. A. Papin, V. A. P. Martins dos Santos, PLoS Computational Biology, 2008, v. 4.pp. 1-18.

182.   High Throughput Phenotypic Characterization of Pseudomonas aeruginosa Membrane Transport Genes, 

       D.A. Johnson, S.G. Tetu, K. Phillippy, J. Chen, Q. Ren & I.T. Paulsen, PLoS Genet., 2008, v. 4, pp. 1-11.

181.   RamA Confers Multidrug Resistance in Salmonella enterica via Increased Expression of acrB, which is Inhibited 

       by Chlorpromazine, A.M. Bailey, I.T. Paulsen, L.J. Piddock, Antimicrob Agents, 2008 v. 52, pp. 3604-3611.

180.   Phenotype Profiling of Single Gene Deletion Mutants of E. coli Using Biolog Technology, Y. Tohsato, H. Mori, 

       Proceeding of the 19th International Conference on Genome Informatics (GIW 2008), Gold Coast, Australia, pp. 1-11.

179.   The Applications of Systematic In-Frame, Single-Gene Knockout Mutant Collection of Escherichia coli K-12, 

       T. Baba, HC Huan, K. Datsenko, BL Wanner, H. Mori, Methods Mol. Biol., 2008, v. 416, pp. 183-194.

178.   Identification and Characterization of Brewers Yeast Using Phenotype MicroArrays, S. Walker, Abstract, Veterinary

       Laboratories Agency Conference, November 2008.

177.   Development of Phenotype MicroArrays for The Characterisation of a Porcine Cell Line, M. Abu Oun, Abstract, 

       Veterinary Laboratories Agency Conference, November 2008.

176.   The Gut Microbiota as a Virtual Organ And Novel Approaches to Understand it, J. Marchesi, Abstract, Veterinary 

       Laboratories Agency Conference, November 2008.

175.   Effects of Microbial Growth Rate on Inhibitory Effects of Antimicrobial Compounds Using Biolog Microarray 

       Chemical Sensitivity Plates, R. Thorn, Abstract, Veterinary Laboratories Agency Conference, November 2008.

174.   Use of Biolog for Studying Oral Communities, J. Greenman, Abstract, Veterinary Laboratories Agency Conference, 

       November 2008.

173.   Integrating PM Technology With In Situ and In Silico Analyses of Microbial Activities, G. Preston, Abstract, 

       Veterinary Laboratories Agency Conference, November 2008.

172.   Metabolomics of Slow-Growing Mycobacterium tuberculosis and Mycobacterium bovis Strains Using Phenotype 

       MicroArray Technology, B. Upadhyay, Abstract, Veterinary Laboratories Agency Conference, November 2008.

171.   Using Phenotypic Data to Construct and Curate Genome-scale Models, P.Suthers, Abstract, Veterinary Laboratories 

       Agency Conference, November 2008.

170.   The Detection of Differences in the Utilisation of Glyoxylate and 2-Carbon Compounds in Salmonella 

       typhimurium, M. Saunders, Abstract, Veterinary Laboratories Agency Conference, November 2008.

169.   Fitness Costs and Stability of a High-level Ciprofloxacin Resistance Phenotype in Salmonella enteritidis, 

       S. Fanning, Abstract, Veterinary Laboratories Agency Conference, November 2008.

168.   Phenotypic and Genotypic Differences Between Pathogenic and Laboratory Escherichia coliStrains, J. Hobman, 

       Abstract, Veterinary Laboratories Agency Conference, November 2008.

167.   Identification of an ABC-Type Trehalose Transporter in Mycobacterium smegmatis, S. Jaques III, L. Daniels, poster, 

       SC-ASM Conference, Nov. 2008, Austin.

166.   Carbon Source Utilization Pattern Among Rapidly Growing Mycobacterium (RGM) Species by Phenotypic Array 

       Analysis Using Biolog OmniLog System, M. Rahman, S. Jaques III, L. Daniels, poster, SC-ASM Conference, 

       Nov. 2008, Austin

165.   Development of a New Test Panel for Identification of Both Gram-Negative and Gram-Positive Bacteria, 

       A. Franco-Buff, V. Gomez, E. Olender, G. Gadzinski, B. Bochner, poster, ECCMID, April, 2008, Barcelona

164.   Phenotype MicroArray Analysis of The Metabolism of Helicobacter pylori, X-H Lei, B. Bochner, poster, 

       Spring Meeting, Society for General Microbiology, March, 2008, Edinburgh

163.   Important Discoveries from Analysing Bacterial Phenotypes, B. R. Bochner, L. Giovannetti, C. Viti, Mol. 

       Microbiol., 2008, v. 70, pp. 274-280.

162.   Florence Conference on Phenotype MicroArray Analysis of Microorganisms, The Environment, Agriculture, and 

       Human Health, C. Viti, B. Bochner, L. Giovannetti, 2008, Annals of Microbiology, v. 2, pp. 347-349.

161.   Phenotypes of Salmonella enterica Serovar Typhi and Acinetobacter Spp., Reflections of Different Lifestyles?, 

       L. Dijkshoorn, J.T. Van Dissel, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, 

       March, 2008.

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